postprocessing

README.md

 # MARVIN-config
 
 MARVIN is the release bot that does automated DBpedia releases each month on three different servers for generic, mappings, wikidata, abstract extraction. 
-The repository at https://git.informatik.uni-leipzig.de/dbpedia-assoc/marvin-config can be used to fork the architecture for creating extensions, developing new extractors or debugging old ones. 
-Fixes and patches will be manually deployed via a fresh `git clone` from the `master` branch of the [DIEF (DBpedia Information Extraction Framework)](https://github.com/dbpedia/extraction-framework/). 
+[This repository](https://git.informatik.uni-leipzig.de/dbpedia-assoc/marvin-config) can be used to fork the architecture for creating extensions, developing new extractors or debugging old ones. 
+Fixes and patches will be deployed on the DBpedia servers each month via a fresh `git clone` from the `master` branch of the [DIEF (DBpedia Information Extraction Framework)](https://github.com/dbpedia/extraction-framework/). 
 
 ## Contributions & License
 All scripts and config files in this repo are CC-0 (Public Domain). 
 We accept pull requests to improve the config files, all contributions will be merged as CC-0. 
+Marvin-config is intended to bootstrap developing fixes for the DIEF.
 
 ## Run a MARVIN extraction
 
+Implementation note: the scripts creates a folder `marvin-extraction` where the code, results and logs are. 
+
 ```
+# check out this repo with all config files
 git clone https://git.informatik.uni-leipzig.de/dbpedia-assoc/marvin-config
 cd marvin-config
+
+
 # (optional) delete previous versions of the DIEF
-rm -rf marvin-config/extraction-framework
-# install dief in marvin-extraction/extraction-framework
+# (~10 minutes) install dief in marvin-extraction/extraction-framework
+# if you installed it already you can run `git pull && mvn clean install` to update
+rm -rf marvin-extraction/extraction-framework
 ./setup-dief.sh
+
 # test run Romanian extraction, very small
 ./marvin_extraction_run.sh --group=test
 ```
 
-To run the other extractions, use either
+To run the other extractions, use either of
 ```
 # around 4-7 days
 ./marvin_extraction_run.sh --group=generic
@@ -39,6 +47,7 @@ Below is a list of cronjobs we use on the different servers:
 TODO
 ```
 
+## 
 
 ## Acknowledgements
 We thank Sören Auer and the Technische Informationsbibliothek (TIB) for providing three servers to run:

functions.sh

@@ -52,22 +52,20 @@ postProcessing() {
     cd $DIEFDIR/scripts;
     echo "post-processing of $GROUP"
     
-    # todo check BASEDIR
-
     if [ "$GROUP" = "mappings" ]
     then
-        >&2 ../run ResolveTransitiveLinks $BASEDIR redirects redirects_transitive .ttl.bz2 @downloaded;
-        >&2 ../run MapObjectUris $BASEDIR redirects_transitive .ttl.bz2 mappingbased-objects-uncleaned _redirected .ttl.bz2 @downloaded;
+        >&2 ../run ResolveTransitiveLinks $EXTRACTIONBASEDIR redirects redirects_transitive .ttl.bz2 @downloaded;
+        >&2 ../run MapObjectUris $EXTRACTIONBASEDIR redirects_transitive .ttl.bz2 mappingbased-objects-uncleaned _redirected .ttl.bz2 @downloaded;
         >&2 ../run TypeConsistencyCheck type.consistency.check.properties;
     elif [ "$GROUP" = "wikidata" ]
     then
-        >&2 ../run ResolveTransitiveLinks $BASEDIR redirects transitive-redirects .ttl.bz2 wikidata
-        >&2 ../run MapObjectUris $BASEDIR transitive-redirects .ttl.bz2 mappingbased-objects-uncleaned,raw -redirected .ttl.bz2 wikidata
+        >&2 ../run ResolveTransitiveLinks $EXTRACTIONBASEDIR redirects transitive-redirects .ttl.bz2 wikidata
+        >&2 ../run MapObjectUris $EXTRACTIONBASEDIR transitive-redirects .ttl.bz2 mappingbased-objects-uncleaned,raw -redirected .ttl.bz2 wikidata
         >&2 ../run TypeConsistencyCheck type.consistency.check.properties;
     elif [ "$GROUP" = "generic" ] 
     then
-        >&2 ../run ResolveTransitiveLinks $BASEDIR redirects redirects_transitive .ttl.bz2 @downloaded;
-        >&2 ../run MapObjectUris $BASEDIR redirects_transitive .ttl.bz2 disambiguations,infobox-properties,page-links,persondata,topical-concepts _redirected .ttl.bz2 @downloaded;
+        >&2 ../run ResolveTransitiveLinks $EXTRACTIONBASEDIR redirects redirects_transitive .ttl.bz2 @downloaded;
+        >&2 ../run MapObjectUris $EXTRACTIONBASEDIR redirects_transitive .ttl.bz2 disambiguations,infobox-properties,page-links,persondata,topical-concepts _redirected .ttl.bz2 @downloaded;
     elif [ "$GROUP" = "abstract" ]
     then
         echo "TODO"
@@ -83,7 +81,7 @@ postProcessing() {
 # compress log files
 archiveLogFiles() {
 	# todo copy to some archive
-    for f in $(find $LOGDIR -type f ); do lbzip2 $f; done;
+    for f in $(find $LOGDIR -type f ); do lbzip2 -f $f; done;
 }
 
 

marvin_extraction_run.sh

@@ -73,10 +73,10 @@ cd $DIEFDIR/dump
 ../run download $CONFIGDIR/download.$GROUP.properties &> $LOGDIR/downloadWikidumps.log 
 
 # EXTRACT
-#extractDumps &> $LOGDIR/extraction.log;
+extractDumps &> $LOGDIR/extraction.log;
 
 # POST-PROCESSING
-#postProcessing 2> $LOGDIR/postProcessing.log;
+postProcessing 2> $LOGDIR/postProcessing.log;
 
 # RELEASE 
 #databusRelease 2> $LOGDIR/databusDeploy.log