Refactor deconstruction.

cml/domain/complexity_reduction.py

cml/domain/construction.py

cml/domain/construction_parallel.py

cml/domain/data_source.py

cml/domain/deconst.py

cml/domain/deconstruction/abstract.py

cml/domain/deconstruction/complete.py

cml/domain/deconstruction/t_sigma.py

cml/domain/deconstruction/z_sigma.py

cml/domain/knowledge.py

cml/domain/reconstruction.py

cml/domain/reconstruction_parallel.py

cml/ports/ml_adapter.py

cml/ports/source_adapters.py

cml/shared/errors.py

cml/shared/logger.py

cml/usecases/command.py

cml/usecases/query.py

cml/usecases/usecase.py

tests/demo/run_demo.py