Refactor construction and reconstruction.

cml/controller/api.py

cml/domain/construction/construction.py

cml/domain/construction/construction_parallel.py

cml/domain/deconstruction/abstract.py

cml/domain/deconstruction/complete.py

cml/domain/deconstruction/deconstruction.py

cml/domain/deconstruction/t_sigma.py

cml/domain/deconstruction/z_sigma.py

cml/domain/knowledge.py

cml/domain/reconstruction/reconstruction.py

cml/domain/reconstruction/reconstruction_parallel.py

cml/ports/ml_adapter.py

cml/shared/logger.py

cml/shared/parameter.py

cml/shared/request.py

cml/shared/settings.py

cml/static/settings.ini

cml/usecases/command.py

cml/usecases/query.py

tests/demo/run_demo.py